User:Owlang/sandbox

This is a dynamic list and may never be able to satisfy particular standards for completeness. You can help by editing the page to add missing items, with references to reliable sources.

This page serves as an attempt to index all NGS-based genomic assay mentions in Wikipedia. Some assays have their own primary article while others are linked to articles of similar assays in which the assay variant is described.

3

• 3' mRNA-seq
• 3C (see Chromosome conformation capture)
• 3'-RACE (see RACE)

4

• 4C (see Chromosome conformation capture)
• 4Tu sequencing (see 4-Thiouracil)

5

• 5C (see Chromosome conformation capture)
• 5'-RACE (see RACE)

A

• ATAC-seq

B

• BRB-seq

C

• CAGE (see SAGE)
• CAPP-Seq
• cfMeDIP-seq
• Chem-seq
• ChIA-PET (see also PET)
• ChIP-PET
• ChIP-exo
• ChIP-on-chip
• ChIP-seq
• ChiRP-Seq
• ChRO-seq (see Nuclear run-on)
• Chromatin immunoprecipitation (ChIP)
• Chromosome conformation capture
• CITE-Seq
• ClickSeq
• Competition-ChIP
• CLIP-seq
• CoPRO (see Nuclear run-on)
• CRISP-seq (see Perturb-seq)
• CROP-seq (see Perturb-seq)
• CUT&RUN
• CUT&TAG

D

• DamID
• DNA-PET
• DNase-seq
• DRIP-seq
• Drop-Seq

E

• eCLIP (see CLIP-seq)
• Enzymatic methyl-seq (EM-seq)
• EPIC-Seq
• Exome sequencing (WES)

F

• FAIRE-Seq
• Fiber-Seq

G

• GRO-seq/cap (see Nuclear run-on)
• Geo-seq
• GUIDE-Seq
• G&T-seq

H

• Hi-C
• HiChIP (see Hi-C)
• HITS-CLIP (see CLIP-seq)

I

• Immunoprecipitation
• iCLIP (see CLIP-seq)

L

• LCM-seq

M

• Methylated DNA immunoprecipitation (MeDIP-seq)
• Methylated DNA immunoprecipitation (MeDIP-chip)
• MeRIPseq
• Micro-C (see Hi-C)
• MNase-seq
• MOWChIP-seq
• MicroRNA sequencing (MiRNA-seq)
• MERFISH

N

• nanoNOMe (see NOMe-seq)
• NICHE-seq
• NOMe-seq
• NOMePlot (see NOMe-seq)
• Nuclear run-on

P

• PAR-CLIP (see CLIP-seq)
• PB-exo (see ChIP-exo)
• PB-seq (see ChIP-exo)
• Paired-end_tag(PET)
• Perturb-seq
• PhIP-Seq
• PIP-seq (see ChIP-exo)
• PLAC-Seq
• PLAYR (see CITE-Seq)
• PRO-seq/cap (see Nuclear run-on)
• ProximID
• Pore-C

R

• RACE(-seq)
• REAP-seq (see CITE-Seq)
• Reduced representation bisulfite sequencing (RRBS)
• Ribosome profiling (Ribo-seq)
• RIP-ChIP
• RNA-PET
• RNA-seq

S

• scATAC-seq (see ATAC-seq)
• scGET-seq
• SAGE (Serial analysis of gene expression
• scRNA-seq or (see single-cell sequencing)
• SLAM-seq (see RNA timestamp)
• SELEX
• snRNA-seq
• STARR-seq
• Sono-Seq
• scNOMe-seq (see NOMe-seq)

T

• tomo-seq
• TCP-seq
• TCR-seq
• TimeLapse-seq (see RNA timestamp)

W

• WhIP-exo
• Whole_genome_sequencing
• Whole genome bisulfite sequencing (WGBS)
• WES (see Exome sequencing)

V

• VINE-seq

See also

• Transcriptomics technologies