Actinophytocola
| Actinophytocola | |
|---|---|
Scientific classification 
| |
| Domain: | Bacteria |
| Kingdom: | Bacillati |
| Phylum: | Actinomycetota |
| Class: | Actinomycetes |
| Order: | Pseudonocardiales |
| Family: | Pseudonocardiaceae |
| Genus: | Actinophytocola Indananda et al. 2010[1] |
| Type species | |
| Actinophytocola oryzae Indananda et al. 2010
| |
| Species | |
Actinophytocola is a genus in the phylum Actinomycetota (Bacteria).
Etymology
[edit]The name Actinophytocola derives from the Greek noun actis or actinos, a ray, beam; Greek noun phyton, plant; Latin masculine gender suff. -cola (from Latin noun incola), a dweller, inhabitant; Neo-Latin masculine gender noun Actinophytocola, actinobacterial dweller inside a plant.[2]
- A. burenkhanensis (Ara et al. 2011; Neo-Latin masculine gender adjective burenkhanensis, of or belonging to Burenkhan, isolated from soil of Burenkhan, Khuvsgul province, Mongolia.)[3]
- A. corallina (Otoguro et al. 2011; Latin feminine gender adjective corallina, coral red, because the organism produces coral-coloured soluble pigment.)[4]
- A. oryzae (Indananda et al. 2010, (Type species of the genus).; Latin noun oryza, rice and also the name of a botanical genus; Latin genitive case noun oryzae, of rice, denoting the isolation of the type strain from roots of Thai glutinous rice plants.)[1]
- A. timorensis (Otoguro et al. 2011; Neo-Latin feminine gender adjective timorensis, of or pertaining to (West) Timor, Indonesia, from where the type strain was isolated.)[4]
Phylogeny
[edit]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI).[5]
| 16S rRNA based LTP_10_2024[6][7][8] | 120 marker proteins based GTDB 10-RS226[9][10][11] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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See also
[edit]References
[edit]- ^ a b Indananda, C.; Matsumoto, A.; Inahashi, Y.; Takahashi, Y.; Duangmal, K.; Thamchaipenet, A. (2009). "Actinophytocola oryzae gen. nov., sp. nov., isolated from the roots of Thai glutinous rice plants, a new member of the family Pseudonocardiaceae". International Journal of Systematic and Evolutionary Microbiology. 60 (5): 1141–1146. doi:10.1099/ijs.0.008417-0. PMID 19666784.
- ^ a b Actinophytocola in LPSN; Freese, H. M.; Meier-Kolthoff, J. P.; Sardà Carbasse, J.; Afolayan, A. O.; Göker, M. (29 October 2025). "TYGS and LPSN in 2025: a Global Core Biodata Resource for genome-based classification and nomenclature of prokaryotes within DSMZ Digital Diversity". Nucleic Acids Research. 53: D1–D12. doi:10.1093/nar/gkaf1110.
- ^ Ara, I.; Tsetseg, B.; Daram, D.; Suto, M.; Ando, K. (2010). "Actinophytocola burenkhanensis sp. Nov., isolated from Mongolian soil". International Journal of Systematic and Evolutionary Microbiology. 61 (5): 1033–1038. doi:10.1099/ijs.0.021659-0. PMID 20511457.
- ^ a b Otogturo, M.; Yamamura, H.; Tamura, T.; Irzaldi, R.; Ratnakomala, S.; Ridwan, R.; Kartina, G.; Triana, E.; Nurkanto, A.; Lestari, Y.; Lisdiyanti, P.; Widyastuti, Y.; Ando, K. (2010). "Actinophytocola timorensis sp. Nov. And Actinophytocola corallina sp. Nov., isolated from soil in Indonesia". International Journal of Systematic and Evolutionary Microbiology. 61 (4): 834–838. doi:10.1099/ijs.0.023432-0. PMID 20495034.
- ^ C.L. Schoch; et al. "Actinophytocola". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.
- ^ "The LTP". Retrieved 10 December 2024.
- ^ "LTP_all tree in newick format". Retrieved 10 December 2024.
- ^ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ^ "GTDB release 10-RS226". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "bac120_r226.sp_label". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 1 May 2025.
- ^ "Species: Actinophytocola glycyrrhizae". lpsn.dsmz.de.
